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Human Monoamine Oxidase B in complex with Farnesol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OJ9 PDB ENTRY 1OJ9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 pH 6.20
Crystal Properties Matthews coefficient Solvent content 2.72 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.634 α = 90 b = 222.096 β = 90 c = 86.961 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 15 99 0.13 8.4 2.7 116561
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 99 0.53 1.1 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OJ9 1.8 15 113437 2869 98.2 0.226 0.225 0.249 RANDOM 41.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.85 -0.68 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.636 r_scangle_it 2.928 r_scbond_it 1.736 r_angle_refined_deg 1.153 r_mcangle_it 1.006 r_mcbond_it 0.5 r_symmetry_hbond_refined 0.399 r_symmetry_vdw_refined 0.261 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.636 r_scangle_it 2.928 r_scbond_it 1.736 r_angle_refined_deg 1.153 r_mcangle_it 1.006 r_mcbond_it 0.5 r_symmetry_hbond_refined 0.399 r_symmetry_vdw_refined 0.261 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.107 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7911 Nucleic Acid Atoms Solvent Atoms 384 Heterogen Atoms 138
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling