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Human Monoamine Oxidase B: I199F mutant in complex with rasagiline
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OJ9 PDB ENTRY 1OJ9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 pH 6.20
Crystal Properties Matthews coefficient Solvent content 2.72 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.026 α = 90 b = 223.524 β = 90 c = 86.714 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 SPring-8
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 98 0.08 12.7 3.8 87975
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 98 0.35 3.6 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OJ9 1.9 15 95349 2440 97.1 0.192 0.191 0.218 RANDOM 16.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 0.08 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.412 r_dihedral_angle_4_deg 18.182 r_dihedral_angle_3_deg 14.597 r_dihedral_angle_1_deg 5.464 r_scangle_it 2.479 r_scbond_it 1.529 r_angle_refined_deg 1.183 r_mcangle_it 0.934 r_mcbond_it 0.616 r_symmetry_hbond_refined 0.389
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.412 r_dihedral_angle_4_deg 18.182 r_dihedral_angle_3_deg 14.597 r_dihedral_angle_1_deg 5.464 r_scangle_it 2.479 r_scbond_it 1.529 r_angle_refined_deg 1.183 r_mcangle_it 0.934 r_mcbond_it 0.616 r_symmetry_hbond_refined 0.389 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.262 r_nbd_refined 0.193 r_xyhbond_nbd_refined 0.103 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7917 Nucleic Acid Atoms Solvent Atoms 545 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling