X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
10.9 M SODIUM/POTASSIUM TARTRATE, 0.1 M HEPES, PH 7.3, 15 % GLYCEROL
Crystal Properties
Matthews coefficientSolvent content
2.8356.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.78α = 90
b = 57.78β = 90
c = 150.09γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDBENT MIRROR2004-12-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-4ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.45098.20.0415.382.593941-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.4997.20.33.352.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.44547378253897.90.1270.1250.155RANDOM9.96
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.190.19-0.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.349
r_dihedral_angle_4_deg14.524
r_dihedral_angle_3_deg10.909
r_sphericity_free10.816
r_dihedral_angle_1_deg6.827
r_scangle_it4.395
r_sphericity_bonded3.703
r_scbond_it3.503
r_mcangle_it2.379
r_mcbond_it1.937
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.349
r_dihedral_angle_4_deg14.524
r_dihedral_angle_3_deg10.909
r_sphericity_free10.816
r_dihedral_angle_1_deg6.827
r_scangle_it4.395
r_sphericity_bonded3.703
r_scbond_it3.503
r_mcangle_it2.379
r_mcbond_it1.937
r_rigid_bond_restr1.689
r_angle_refined_deg1.652
r_angle_other_deg0.856
r_mcbond_other0.79
r_symmetry_vdw_other0.284
r_xyhbond_nbd_refined0.211
r_nbd_refined0.209
r_nbd_other0.192
r_nbtor_refined0.184
r_symmetry_hbond_refined0.145
r_symmetry_vdw_refined0.13
r_chiral_restr0.107
r_nbtor_other0.085
r_bond_refined_d0.017
r_gen_planes_refined0.009
r_gen_planes_other0.002
r_bond_other_d0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1546
Nucleic Acid Atoms
Solvent Atoms276
Heterogen Atoms10

Software

Software
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
SHELXDphasing
SHELXEphasing
REFMACrefinement