X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1H6VPDB ENTRY 1H6V

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP150 UL SITTING DROPS, 20% PEG3350, 0.1 M TRIS PH 7, ADDITIVE: NSDB-221
Crystal Properties
Matthews coefficientSolvent content
3.161

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.756α = 90
b = 149.651β = 91.96
c = 146.789γ = 90
Symmetry
Space GroupP 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMIRRORS2006-01-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.1ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.747950.1173.251009462
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.8930.4622.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1H6V2.7149.07959215025950.2050.2030.248RANDOM36.24
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.11-0.351.56-0.48
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.326
r_dihedral_angle_4_deg20.16
r_dihedral_angle_3_deg16.772
r_dihedral_angle_1_deg5.4
r_scangle_it1.942
r_angle_refined_deg1.252
r_scbond_it1.148
r_angle_other_deg0.916
r_mcangle_it0.785
r_mcbond_it0.464
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.326
r_dihedral_angle_4_deg20.16
r_dihedral_angle_3_deg16.772
r_dihedral_angle_1_deg5.4
r_scangle_it1.942
r_angle_refined_deg1.252
r_scbond_it1.148
r_angle_other_deg0.916
r_mcangle_it0.785
r_mcbond_it0.464
r_symmetry_vdw_other0.229
r_nbd_refined0.217
r_nbd_other0.187
r_nbtor_refined0.183
r_symmetry_hbond_refined0.137
r_symmetry_vdw_refined0.133
r_xyhbond_nbd_refined0.124
r_nbtor_other0.085
r_chiral_restr0.078
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.002
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms21968
Nucleic Acid Atoms
Solvent Atoms228
Heterogen Atoms272

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing