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Identification of chemically diverse Chk1 inhibitors by receptor- based virtual screening
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IA8 PDB ENTRY 1IA8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.9 56.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.957 α = 90 b = 65.78 β = 102.46 c = 54.625 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 98.2 0.05 15.2 4.3 17851 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.31 51.2 0.3 2.7 1.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1IA8 2.2 30 14408 770 95.5 0.191 0.188 0.186 0.258 0.2571 RANDOM 47.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.47 -0.25 0.2 2.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 20.047 r_dihedral_angle_4_deg 17.757 r_dihedral_angle_1_deg 7.738 r_scangle_it 5.489 r_scbond_it 3.5 r_mcangle_it 2.465 r_angle_refined_deg 2.102 r_mcbond_it 1.377 r_symmetry_hbond_refined 0.731 r_symmetry_vdw_refined 0.398
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 20.047 r_dihedral_angle_4_deg 17.757 r_dihedral_angle_1_deg 7.738 r_scangle_it 5.489 r_scbond_it 3.5 r_mcangle_it 2.465 r_angle_refined_deg 2.102 r_mcbond_it 1.377 r_symmetry_hbond_refined 0.731 r_symmetry_vdw_refined 0.398 r_nbd_refined 0.243 r_xyhbond_nbd_refined 0.217 r_chiral_restr 0.185 r_bond_refined_d 0.024 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2139 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing