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X-ray crystal structure analysis of recombinant wild-type canine milk lysozyme (apo-type)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 Na HEPES 2%, PEG400, 2M AmSO4, pH 7.5, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 1.92 35.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.048 α = 90 b = 31.048 β = 90 c = 199.757 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 1.0 Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 65.938 99.7 15888 20.804
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.941 19.57 15044 792 99.81 0.1839 0.18049 0.1918 0.25001 0.2565 RANDOM 24.614
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.12 r_scangle_it 5.082 r_scbond_it 3.596 r_mcangle_it 2.439 r_angle_refined_deg 2.234 r_mcbond_it 1.478 r_symmetry_vdw_refined 1.291 r_angle_other_deg 1.102 r_symmetry_vdw_other 0.28 r_nbd_other 0.262
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.12 r_scangle_it 5.082 r_scbond_it 3.596 r_mcangle_it 2.439 r_angle_refined_deg 2.234 r_mcbond_it 1.478 r_symmetry_vdw_refined 1.291 r_angle_other_deg 1.102 r_symmetry_vdw_other 0.28 r_nbd_other 0.262 r_nbd_refined 0.241 r_symmetry_hbond_refined 0.229 r_xyhbond_nbd_refined 0.208 r_chiral_restr 0.139 r_nbtor_other 0.093 r_bond_refined_d 0.031 r_gen_planes_refined 0.012 r_gen_planes_other 0.007 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2020 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling XFIT data reduction