2D00

Subunit F of V-type ATPase/synthase

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.6	293	PEG 400, calcium acetate, potassium chloride, MES, MOPS, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K

Crystal Properties
Matthews coefficient	Solvent content
2.59	53.02

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 81.705	α = 90
b = 138.295	β = 90
c = 66.096	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH		2003-11-03	M	SINGLE WAVELENGTH
2	1	x-ray	100	CCD	ADSC QUANTUM 4		2003-11-13	M	MAD
1,2	1

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	0.9790	SLS	X06SA
2	SYNCHROTRON	ESRF BEAMLINE ID14-4	0.9794, 0.9796, 0.9724	ESRF	ID14-4

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1,2	2.2	26	99.6			38602	38602

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1,2	2.2	2.28	99.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MAD	THROUGHOUT	2.2	25	37320	1206	100	0.21403	0.22	0.26221	0.27	RANDOM	64.158

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.76			-0.99		0.23

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.67
r_dihedral_angle_3_deg	18.547
r_dihedral_angle_4_deg	17.206
r_dihedral_angle_1_deg	8.779
r_scangle_it	5.313
r_scbond_it	3.412
r_angle_refined_deg	2.492
r_mcangle_it	2.065
r_mcbond_it	1.458
r_angle_other_deg	1.109
r_mcbond_other	0.387
r_xyhbond_nbd_other	0.373
r_symmetry_hbond_refined	0.314
r_symmetry_vdw_refined	0.276
r_nbd_refined	0.273
r_xyhbond_nbd_refined	0.271
r_nbd_other	0.222
r_symmetry_vdw_other	0.211
r_nbtor_refined	0.196
r_chiral_restr	0.148
r_metal_ion_refined	0.134
r_nbtor_other	0.103
r_bond_refined_d	0.033
r_symmetry_metal_ion_refined	0.024
r_gen_planes_refined	0.01
r_bond_other_d	0.006
r_gen_planes_other	0.003
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4998
Nucleic Acid Atoms
Solvent Atoms	287
Heterogen Atoms	4

Software

Software
Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
MLPHARE	phasing