2D3B

Crystal Structure of the Maize Glutamine Synthetase complexed with AMPPNP and Methionine sulfoximine


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.82989% PEG8000, 5% MPD, 100MM Tris-HCl, 10MM MnCl2, 1MM AMPPNP, 1MM L-Methionine sulfoximine, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.753.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 95.881α = 90
b = 190.943β = 101.23
c = 117.904γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS VII2004-07-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.55075.60.0848.811.94159884
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
3.53.6378.90.2592.321.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT3.533.541315222783.10.168040.165840.20905RANDOM75.62
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01-0.010.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.198
r_dihedral_angle_3_deg19.605
r_dihedral_angle_4_deg18.042
r_dihedral_angle_1_deg6.55
r_scangle_it2.348
r_angle_refined_deg1.616
r_scbond_it1.46
r_mcangle_it1.143
r_mcbond_it0.671
r_symmetry_vdw_refined0.433
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.198
r_dihedral_angle_3_deg19.605
r_dihedral_angle_4_deg18.042
r_dihedral_angle_1_deg6.55
r_scangle_it2.348
r_angle_refined_deg1.616
r_scbond_it1.46
r_mcangle_it1.143
r_mcbond_it0.671
r_symmetry_vdw_refined0.433
r_nbtor_refined0.317
r_nbd_refined0.231
r_symmetry_hbond_refined0.209
r_xyhbond_nbd_refined0.16
r_chiral_restr0.101
r_metal_ion_refined0.096
r_bond_refined_d0.015
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms27450
Nucleic Acid Atoms
Solvent Atoms377
Heterogen Atoms450

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing