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Structure of Conserved Protein of Unknown Function PG0164 from Porphyromonas gingivalis [W83]
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 2M NaCl, 0.1M Citric Acid, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.19 43.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.631 α = 90 b = 50.631 β = 90 c = 68.651 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD SBC 2005-07-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97940 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 43.85 99.4 6815 6774 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.08 99.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.01 27 2 6815 6774 335 99.65 0.18045 0.1783 0.17829 0.22715 RANDOM 20.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.09 0.54 1.09 -1.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 24.969 r_dihedral_angle_2_deg 22.839 r_dihedral_angle_3_deg 14.506 r_dihedral_angle_1_deg 13.485 r_scangle_it 4.108 r_scbond_it 2.817 r_angle_refined_deg 1.847 r_mcangle_it 1.72 r_mcbond_it 1.132 r_symmetry_hbond_refined 0.425
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 24.969 r_dihedral_angle_2_deg 22.839 r_dihedral_angle_3_deg 14.506 r_dihedral_angle_1_deg 13.485 r_scangle_it 4.108 r_scbond_it 2.817 r_angle_refined_deg 1.847 r_mcangle_it 1.72 r_mcbond_it 1.132 r_symmetry_hbond_refined 0.425 r_symmetry_vdw_refined 0.372 r_nbtor_refined 0.31 r_nbd_refined 0.241 r_xyhbond_nbd_refined 0.185 r_chiral_restr 0.163 r_bond_refined_d 0.017 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 671 Nucleic Acid Atoms Solvent Atoms 79 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling