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Foot-and-mouth disease virus RNA-dependent RNA polymerase in complex with a template-primer RNA and with ribavirin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WNE PDB entry 1WNE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 30% PEG 4K, 0.2M magnesium acetate, 0.1M sodium cacodilate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.18 43.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.094 α = 90 b = 94.094 β = 90 c = 99.285 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD ADSC QUANTUM 315 2004-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.93 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.81 30 90 0.1 0.09 7.5 11820 11173 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1WNE 2.81 30 11173 581 91.67 0.24546 0.24289 0.2342 0.296 RANDOM 49.125
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.03 0.51 1.03 -1.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.977 r_scangle_it 3.39 r_angle_refined_deg 2.116 r_scbond_it 2.11 r_mcangle_it 1.523 r_angle_other_deg 0.985 r_mcbond_it 0.794 r_symmetry_vdw_other 0.282 r_nbd_refined 0.279 r_nbd_other 0.255
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.977 r_scangle_it 3.39 r_angle_refined_deg 2.116 r_scbond_it 2.11 r_mcangle_it 1.523 r_angle_other_deg 0.985 r_mcbond_it 0.794 r_symmetry_vdw_other 0.282 r_nbd_refined 0.279 r_nbd_other 0.255 r_symmetry_vdw_refined 0.231 r_symmetry_hbond_refined 0.218 r_xyhbond_nbd_refined 0.196 r_chiral_restr 0.101 r_nbtor_other 0.099 r_bond_refined_d 0.021 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3682 Nucleic Acid Atoms 314 Solvent Atoms 7 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement ProDC data collection DENZO data reduction SCALEPACK data scaling CNS phasing