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Holo tyrosine phenol-lyase from Citrobacter freundii at pH 8.0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOUR DIFFUSION, HANGING DROP 8 293 50 mM triethanolamine buffer, 0.5 mM PLP, 2 mM DDT, 0.4 M to 0.8 M KCl, 35 - 38% (w/v) monomethyl ether PEG 5000, pH 8.0, VAPOUR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.81 60.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.86 α = 90 b = 143.85 β = 90 c = 60.07 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE MARRESEARCH 1995-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 0.87 EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 92 0.075 85710 85710
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 90.7 90.7 0.359
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 19.84 84762 84762 2508 92.06 0.153 0.153 0.152 0.1521 0.186 RANDOM 26.258
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.16 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.495 r_dihedral_angle_3_deg 13.324 r_dihedral_angle_4_deg 10.533 r_dihedral_angle_1_deg 5.91 r_scangle_it 5.479 r_scbond_it 3.866 r_mcangle_it 2.098 r_angle_refined_deg 1.312 r_mcbond_it 1.289 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.495 r_dihedral_angle_3_deg 13.324 r_dihedral_angle_4_deg 10.533 r_dihedral_angle_1_deg 5.91 r_scangle_it 5.479 r_scbond_it 3.866 r_mcangle_it 2.098 r_angle_refined_deg 1.312 r_mcbond_it 1.289 r_nbtor_refined 0.305 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.184 r_symmetry_hbond_refined 0.17 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.095 r_metal_ion_refined 0.046 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7238 Nucleic Acid Atoms Solvent Atoms 902 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement