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Crystal structure of FapR (in complex with effector)- a global regulator of fatty acid biosynthesis in B. subtilis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 25% ethylenglycol, 5mM malonyl-CoA, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 4.8 74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.441 α = 90 b = 89.441 β = 90 c = 162.166 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9794 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 63.25 100 0.079 0.079 19.3 6.9 12596 12596 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.1 3.27 100 100 0.31 0.31 6 7.2 1780
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.1 63.25 12545 12545 941 99.97 0.19 0.19 0.187 0.2267 0.226 0.2564 RANDOM 59.544
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 0.69 -1.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.85 r_dihedral_angle_3_deg 22.542 r_dihedral_angle_4_deg 18.749 r_dihedral_angle_1_deg 8.36 r_scangle_it 3.342 r_angle_refined_deg 2.137 r_scbond_it 1.934 r_mcangle_it 1.275 r_angle_other_deg 0.945 r_mcbond_it 0.793
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.85 r_dihedral_angle_3_deg 22.542 r_dihedral_angle_4_deg 18.749 r_dihedral_angle_1_deg 8.36 r_scangle_it 3.342 r_angle_refined_deg 2.137 r_scbond_it 1.934 r_mcangle_it 1.275 r_angle_other_deg 0.945 r_mcbond_it 0.793 r_nbd_refined 0.234 r_symmetry_vdw_other 0.218 r_symmetry_vdw_refined 0.216 r_nbd_other 0.206 r_nbtor_refined 0.191 r_xyhbond_nbd_refined 0.146 r_mcbond_other 0.117 r_chiral_restr 0.107 r_symmetry_hbond_refined 0.102 r_nbtor_other 0.098 r_bond_refined_d 0.02 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2238 Nucleic Acid Atoms Solvent Atoms 10 Heterogen Atoms 64
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling AMoRE phasing