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Crystal structure of FapR- a global regulator of fatty acid biosynthesis in B. subtilis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 1.2M ammonium sulfate, 2% PEG 400, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.38 48.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.239 α = 90 b = 84.32 β = 90 c = 155.385 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH toroidal mirror 2004-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.07175 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 57.17 80.5 0.083 0.083 13.7 5 14880 14880 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.64 50 0.287 0.287 4.8 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 30 14825 14035 790 79.76 0.22162 0.21889 0.2568 0.27377 0.2999 RANDOM 61.423
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.7 11.16 -6.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.705 r_dihedral_angle_4_deg 28.418 r_dihedral_angle_3_deg 18.121 r_dihedral_angle_1_deg 7.928 r_scangle_it 3.113 r_scbond_it 1.98 r_angle_refined_deg 1.826 r_mcangle_it 1.301 r_mcbond_it 1.109 r_angle_other_deg 0.955
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.705 r_dihedral_angle_4_deg 28.418 r_dihedral_angle_3_deg 18.121 r_dihedral_angle_1_deg 7.928 r_scangle_it 3.113 r_scbond_it 1.98 r_angle_refined_deg 1.826 r_mcangle_it 1.301 r_mcbond_it 1.109 r_angle_other_deg 0.955 r_symmetry_vdw_other 0.219 r_nbd_refined 0.195 r_mcbond_other 0.193 r_nbd_other 0.19 r_nbtor_refined 0.177 r_symmetry_vdw_refined 0.145 r_xyhbond_nbd_refined 0.136 r_chiral_restr 0.113 r_nbtor_other 0.091 r_bond_refined_d 0.022 r_symmetry_hbond_refined 0.016 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2964 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling AMoRE phasing