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Crystal Structures of E. coli Laccase CueO under different copper binding situations
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 16% polyethylene glycol 4000, 5% Isopropanol, 100mM tri-Sodium Citrate dihydrate pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.18 43.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.343 α = 90 b = 73.319 β = 90 c = 183.676 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BSRF BEAMLINE 3W1A 1.0 BSRF 3W1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 91.67 98 18395 18395
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 91.67 18362 938 98.06 0.168 0.165 0.1762 0.223 0.1738 RANDOM 25.309
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 -1.47 0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.034 r_dihedral_angle_4_deg 15.67 r_dihedral_angle_3_deg 13.308 r_dihedral_angle_1_deg 6.451 r_scangle_it 1.592 r_mcangle_it 1.349 r_angle_refined_deg 1.216 r_scbond_it 1.004 r_mcbond_it 0.786 r_angle_other_deg 0.747
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.034 r_dihedral_angle_4_deg 15.67 r_dihedral_angle_3_deg 13.308 r_dihedral_angle_1_deg 6.451 r_scangle_it 1.592 r_mcangle_it 1.349 r_angle_refined_deg 1.216 r_scbond_it 1.004 r_mcbond_it 0.786 r_angle_other_deg 0.747 r_symmetry_vdw_refined 0.217 r_symmetry_vdw_other 0.208 r_nbd_refined 0.185 r_nbd_other 0.181 r_nbtor_refined 0.166 r_xyhbond_nbd_refined 0.131 r_symmetry_hbond_refined 0.106 r_mcbond_other 0.106 r_metal_ion_refined 0.091 r_nbtor_other 0.083 r_chiral_restr 0.067 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3529 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection SCALEPACK data scaling AMoRE phasing