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Crystal structure of the N-terminally truncated OMTKY3-del(1-5)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.1M HEPES-Na pH 7.5, 10% v/v isopropanol, 20% w/v PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 1.81 31.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 22.9 α = 90 b = 34.429 β = 97.25 c = 25.794 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 2003-10-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.954 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 40 97.7 13772
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.16 1.2 91.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.16 40 12224 1348 97.79 0.15027 0.14718 0.1739 0.17733 0.1972 RANDOM 14.037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 -0.04 -0.67 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.37 r_dihedral_angle_4_deg 13.488 r_dihedral_angle_3_deg 10.225 r_dihedral_angle_1_deg 6.224 r_scangle_it 3.141 r_scbond_it 2.718 r_mcangle_it 2.61 r_mcbond_it 2.3 r_angle_refined_deg 1.672 r_mcbond_other 1.209
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.37 r_dihedral_angle_4_deg 13.488 r_dihedral_angle_3_deg 10.225 r_dihedral_angle_1_deg 6.224 r_scangle_it 3.141 r_scbond_it 2.718 r_mcangle_it 2.61 r_mcbond_it 2.3 r_angle_refined_deg 1.672 r_mcbond_other 1.209 r_angle_other_deg 1.131 r_symmetry_vdw_other 0.285 r_symmetry_hbond_refined 0.233 r_nbd_refined 0.197 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.179 r_nbd_other 0.156 r_chiral_restr 0.137 r_symmetry_vdw_refined 0.129 r_nbtor_other 0.084 r_gen_planes_refined 0.025 r_bond_refined_d 0.018 r_gen_planes_other 0.015 r_bond_other_d 0.003 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 392 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling MOLREP phasing