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FERM domain of EPB41L3 (DAL-1)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 20% EtOH
0.1 M Tris pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4 69.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.5 α = 90 b = 135.5 β = 90 c = 49.8 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Double crystal monochromator 2006-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.07 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 99.4 0.08 21.13 11 35521 -3 36.146
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.1 98.4 0.561 4.8 4709
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 29.34 35521 35521 1779 99.9 0.188 0.188 0.187 0.1911 0.217 0.2257 RANDOM 28.172
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.16 -0.32 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.307 r_dihedral_angle_4_deg 16.261 r_dihedral_angle_3_deg 15.931 r_dihedral_angle_1_deg 6.241 r_scangle_it 4.325 r_scbond_it 3.126 r_mcangle_it 1.894 r_angle_refined_deg 1.735 r_mcbond_it 1.678 r_angle_other_deg 0.982
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.307 r_dihedral_angle_4_deg 16.261 r_dihedral_angle_3_deg 15.931 r_dihedral_angle_1_deg 6.241 r_scangle_it 4.325 r_scbond_it 3.126 r_mcangle_it 1.894 r_angle_refined_deg 1.735 r_mcbond_it 1.678 r_angle_other_deg 0.982 r_mcbond_other 0.286 r_symmetry_vdw_other 0.283 r_nbd_refined 0.211 r_symmetry_hbond_refined 0.197 r_nbd_other 0.194 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.104 r_symmetry_vdw_refined 0.096 r_nbtor_other 0.091 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2323 Nucleic Acid Atoms Solvent Atoms 247 Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing