2HG3

Reaction centre from Rhodobacter sphaeroides strain R-26.1 complexed with brominated phosphatidylcholine

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	Other		Unpublished structure of reaction centre at 1.95A resolution

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8	289	Potassium phosphate, LDAO, 1,2,3-heptanetriol, dioxane, Tris-HCl, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 16.0K

Crystal Properties
Matthews coefficient	Solvent content
5.54	77.81

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 139.844	α = 90
b = 139.844	β = 90
c = 184.335	γ = 120

Symmetry
Space Group	P 31 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 4	mirrors	2004-01-17	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SRS BEAMLINE PX9.6	0.87	SRS	PX9.6

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.7	34.36	99.9	0.082	14.6	5.8		57840			57.8

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.7	2.85	100		0.629	2.6	5.8	8353

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	Unpublished structure of reaction centre at 1.95A resolution	2.7	34.35	57529	54677	2852	99.66	0.16624	0.16624	0.16444	0.19944	RANDOM	42.887

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.3	0.15		0.3		-0.45

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.671
r_dihedral_angle_4_deg	18.382
r_dihedral_angle_3_deg	15.748
r_dihedral_angle_1_deg	6.175
r_scangle_it	3.274
r_scbond_it	2.205
r_angle_refined_deg	1.856
r_mcangle_it	1.253
r_angle_other_deg	1.25
r_mcbond_it	0.674
r_symmetry_vdw_other	0.265
r_nbd_refined	0.226
r_symmetry_vdw_refined	0.224
r_symmetry_hbond_refined	0.218
r_nbd_other	0.202
r_nbtor_refined	0.2
r_xyhbond_nbd_refined	0.161
r_mcbond_other	0.148
r_chiral_restr	0.098
r_nbtor_other	0.093
r_metal_ion_refined	0.045
r_bond_refined_d	0.019
r_gen_planes_refined	0.009
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6468
Nucleic Acid Atoms
Solvent Atoms	452
Heterogen Atoms	895

Software

Software
Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing