X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2HP0PDB entry 2HP0

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.229822 % PEG 3350, 0.2M ammonium sulphate, 0.1M Bis-Tris propane, pH 7.2, VAPOR DIFFUSION, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3146.84

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.365α = 90
b = 104.21β = 103.33
c = 78.545γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2005-04-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I7111.0628MAX III711

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.72397.60.06914.39281192811
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.7984.50.293.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUTPDB entry 2HP01.71239388192783468098.780.158930.158930.157180.19155RANDOM13.324
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.13-0.240.91-1.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.491
r_dihedral_angle_4_deg15.286
r_dihedral_angle_3_deg12.391
r_dihedral_angle_1_deg5.57
r_scangle_it2.803
r_scbond_it1.921
r_angle_refined_deg1.364
r_mcangle_it1.102
r_mcbond_it0.932
r_angle_other_deg0.828
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.491
r_dihedral_angle_4_deg15.286
r_dihedral_angle_3_deg12.391
r_dihedral_angle_1_deg5.57
r_scangle_it2.803
r_scbond_it1.921
r_angle_refined_deg1.364
r_mcangle_it1.102
r_mcbond_it0.932
r_angle_other_deg0.828
r_symmetry_vdw_other0.234
r_nbd_refined0.216
r_mcbond_other0.208
r_symmetry_vdw_refined0.185
r_nbd_other0.184
r_nbtor_refined0.178
r_symmetry_hbond_refined0.138
r_xyhbond_nbd_refined0.134
r_nbtor_other0.087
r_chiral_restr0.081
r_bond_refined_d0.013
r_xyhbond_nbd_other0.008
r_gen_planes_refined0.005
r_bond_other_d0.003
r_gen_planes_other0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6852
Nucleic Acid Atoms
Solvent Atoms719
Heterogen Atoms95

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
AMoREphasing