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Crystal Structure of Mn2+ bound ECAI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AJT PDB ENTRY 2AJT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 PEG 3350, Tri-sodium citrate dihydrate, MnCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.52 51.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.87 α = 90 b = 116.87 β = 90 c = 215.076 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2006-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C 0.97860 NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 100 0.094 0.094 18.4 4.9 80763
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 100 0.533 0.533 3 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2AJT 2.8 20 37213 1988 92.31 0.2318 0.22878 0.3171 0.28811 0.3627 RANDOM 44.798
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.31 2.66 5.31 -7.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.57 r_dihedral_angle_3_deg 18.86 r_dihedral_angle_4_deg 18.831 r_dihedral_angle_1_deg 7.09 r_angle_refined_deg 1.216 r_scangle_it 1.136 r_angle_other_deg 0.783 r_scbond_it 0.72 r_mcangle_it 0.541 r_mcbond_it 0.358
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.57 r_dihedral_angle_3_deg 18.86 r_dihedral_angle_4_deg 18.831 r_dihedral_angle_1_deg 7.09 r_angle_refined_deg 1.216 r_scangle_it 1.136 r_angle_other_deg 0.783 r_scbond_it 0.72 r_mcangle_it 0.541 r_mcbond_it 0.358 r_symmetry_vdw_other 0.227 r_nbd_refined 0.226 r_nbd_other 0.192 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.172 r_symmetry_hbond_refined 0.145 r_symmetry_vdw_refined 0.131 r_nbtor_other 0.087 r_xyhbond_nbd_other 0.083 r_chiral_restr 0.066 r_mcbond_other 0.052 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11459 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing