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Rhodopseudomonas palustris prolyl-tRNA synthetase in complex with CysAMS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.1 M citric acid (pH 5.5), 10-11 % PEG 3000, 15-20 % ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.61 65.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 217.9 α = 90 b = 107.47 β = 120.43 c = 110.66 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-09-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.97935 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 50 93.5 0.01 2.5 51737 48377 2.85 2.85
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.85 3 75.5 0.411 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.85 51737 46284 2514 94.62 0.21436 0.21098 0.27676 0.2827 RANDOM 59.182
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.57 -0.68 0.3 1.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.992 r_dihedral_angle_3_deg 20.632 r_dihedral_angle_4_deg 17.924 r_dihedral_angle_1_deg 6.975 r_scangle_it 2.32 r_angle_refined_deg 1.531 r_scbond_it 1.383 r_mcangle_it 1.11 r_mcbond_it 0.635 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.992 r_dihedral_angle_3_deg 20.632 r_dihedral_angle_4_deg 17.924 r_dihedral_angle_1_deg 6.975 r_scangle_it 2.32 r_angle_refined_deg 1.531 r_scbond_it 1.383 r_mcangle_it 1.11 r_mcbond_it 0.635 r_nbtor_refined 0.318 r_symmetry_hbond_refined 0.308 r_nbd_refined 0.243 r_symmetry_vdw_refined 0.196 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.097 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10507 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms 87
Software Software Software Name Purpose REFMAC refinement MxCuBE data collection XDS data reduction XSCALE data scaling MOLREP phasing