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Crystal structure of transcriptional regulator SCO5951 from Streptomyces coelicolor A3(2)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.2 293 0.1M Tris7.2, 0.2M CaCl2, 30%PEG400, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.069 α = 90 b = 85.617 β = 90 c = 126.341 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 mirrors 2006-06-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97904 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.6 0.079 0.059 31.5 7.7 48840 48644 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 96.9 0.432 0.399 3.8 6.7 4651
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 50 46137 46137 2454 99.23 0.16607 0.16607 0.16437 0.203 0.19876 0.2264 RANDOM 12.188
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 1.52 -0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.199 r_dihedral_angle_4_deg 18.733 r_dihedral_angle_3_deg 12.325 r_dihedral_angle_1_deg 4.824 r_scangle_it 3.845 r_scbond_it 2.538 r_angle_refined_deg 1.506 r_mcangle_it 1.348 r_mcbond_it 0.926 r_symmetry_vdw_refined 0.359
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.199 r_dihedral_angle_4_deg 18.733 r_dihedral_angle_3_deg 12.325 r_dihedral_angle_1_deg 4.824 r_scangle_it 3.845 r_scbond_it 2.538 r_angle_refined_deg 1.506 r_mcangle_it 1.348 r_mcbond_it 0.926 r_symmetry_vdw_refined 0.359 r_nbtor_refined 0.306 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.211 r_metal_ion_refined 0.189 r_xyhbond_nbd_refined 0.179 r_symmetry_metal_ion_refined 0.156 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2816 Nucleic Acid Atoms Solvent Atoms 481 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing O model building SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing Coot model building