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Crystal structure of recombinant pyranose 2-oxidase H548N mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 298 12-13% monomethyl ether PEG 2000, 0.1 M mes, 50 mM CaCl2, 25% glycerol , pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.54 51.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 168.431 α = 90 b = 103.142 β = 106.08 c = 168.915 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 97 0.074 8.2 3.7 414274 436427
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.9 20 422203 417976 4236 96.74 0.15209 0.15209 0.15171 0.1598 0.18913 0.1971 RANDOM 14.984
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.1 0.34 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.637 r_dihedral_angle_4_deg 14.042 r_dihedral_angle_3_deg 13.44 r_dihedral_angle_1_deg 6.819 r_scangle_it 3.625 r_scbond_it 2.598 r_angle_refined_deg 1.734 r_mcangle_it 1.552 r_mcbond_it 1.368 r_angle_other_deg 0.989
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.637 r_dihedral_angle_4_deg 14.042 r_dihedral_angle_3_deg 13.44 r_dihedral_angle_1_deg 6.819 r_scangle_it 3.625 r_scbond_it 2.598 r_angle_refined_deg 1.734 r_mcangle_it 1.552 r_mcbond_it 1.368 r_angle_other_deg 0.989 r_symmetry_vdw_other 0.32 r_symmetry_vdw_refined 0.276 r_mcbond_other 0.268 r_nbd_refined 0.233 r_nbd_other 0.216 r_xyhbond_nbd_refined 0.206 r_symmetry_hbond_refined 0.193 r_chiral_restr 0.182 r_nbtor_refined 0.176 r_xyhbond_nbd_other 0.164 r_nbtor_other 0.089 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 36480 Nucleic Acid Atoms Solvent Atoms 4255 Heterogen Atoms 520
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data reduction XSCALE data scaling