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Crystal structure of recombinant pyranose 2-oxidase H167A mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 298 12-13% monomethyl ether PEG 2000, 0.1 M mes, 50 mM CaCl2, 25% glycerol , pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.52 51.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 168.066 α = 90 b = 102.996 β = 106.43 c = 168.56 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2004-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-5 0.9680 MAX II I911-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 39 99.9 0.106 11.4 4.6 659653 660306
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.65 39 659652 653089 6563 99.9 0.17222 0.17222 0.17188 0.1788 0.20532 0.209 RANDOM 17.939
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 0.01 0.41 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.028 r_dihedral_angle_4_deg 14.613 r_dihedral_angle_3_deg 13.419 r_dihedral_angle_1_deg 6.744 r_scangle_it 3.774 r_scbond_it 2.771 r_angle_refined_deg 1.778 r_mcangle_it 1.651 r_mcbond_it 1.451 r_angle_other_deg 0.976
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.028 r_dihedral_angle_4_deg 14.613 r_dihedral_angle_3_deg 13.419 r_dihedral_angle_1_deg 6.744 r_scangle_it 3.774 r_scbond_it 2.771 r_angle_refined_deg 1.778 r_mcangle_it 1.651 r_mcbond_it 1.451 r_angle_other_deg 0.976 r_symmetry_vdw_other 0.391 r_symmetry_hbond_refined 0.345 r_symmetry_vdw_refined 0.308 r_mcbond_other 0.302 r_nbd_refined 0.26 r_nbd_other 0.227 r_xyhbond_nbd_refined 0.221 r_chiral_restr 0.19 r_nbtor_refined 0.183 r_nbtor_other 0.091 r_xyhbond_nbd_other 0.084 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 36480 Nucleic Acid Atoms Solvent Atoms 4758 Heterogen Atoms 520
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data reduction XSCALE data scaling