X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1N401N40/2IJ5
experimental modelPDB 2IJ51N40/2IJ5

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7278PEG 3350 and 0.2M NaSCN, saturating fluconazole conc., pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 278K
Crystal Properties
Matthews coefficientSolvent content
2.4649.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.805α = 90
b = 129.898β = 90
c = 323.393γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102005-01-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-30.93ESRFID14-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.92098.90.0879.4166629166629

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1N40/2IJ51.920166629166629878689.90.170350.170350.167360.22644RANDOM26.878
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.340.42-0.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.76
r_dihedral_angle_4_deg16.31
r_dihedral_angle_3_deg14.844
r_sphericity_free5.899
r_dihedral_angle_1_deg5.647
r_scangle_it3.394
r_scbond_it2.452
r_angle_refined_deg1.601
r_mcangle_it1.548
r_sphericity_bonded1.462
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.76
r_dihedral_angle_4_deg16.31
r_dihedral_angle_3_deg14.844
r_sphericity_free5.899
r_dihedral_angle_1_deg5.647
r_scangle_it3.394
r_scbond_it2.452
r_angle_refined_deg1.601
r_mcangle_it1.548
r_sphericity_bonded1.462
r_rigid_bond_restr1.349
r_mcbond_it1.25
r_angle_other_deg0.867
r_mcbond_other0.408
r_symmetry_vdw_other0.288
r_nbd_refined0.217
r_symmetry_hbond_refined0.215
r_nbd_other0.193
r_xyhbond_nbd_refined0.178
r_nbtor_refined0.174
r_symmetry_vdw_refined0.134
r_chiral_restr0.091
r_nbtor_other0.088
r_bond_refined_d0.017
r_xyhbond_nbd_other0.017
r_gen_planes_refined0.006
r_bond_other_d0.003
r_gen_planes_other0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms18072
Nucleic Acid Atoms
Solvent Atoms1982
Heterogen Atoms434

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing