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Human mitochondrial beta-ketoacyl ACP synthase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W0I PDB ENTRY 1W0I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.8 24% PEG-3350, 0.2 M NH4CL, pH 7.80
Crystal Properties Matthews coefficient Solvent content 2.19 43.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.626 α = 90 b = 96.061 β = 90 c = 115.468 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 36.9 98.1 0.08 6.8 4.3 51373 22.73
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.15 96.4 0.27 2.7 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W0I 2.06 36.94 47479 2496 100 0.163 0.161 0.205 0.1864 RANDOM 28.73
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.604 r_dihedral_angle_3_deg 13.249 r_dihedral_angle_4_deg 9.353 r_dihedral_angle_1_deg 5.372 r_scangle_it 5.061 r_mcangle_it 4.11 r_scbond_it 3.43 r_mcbond_it 2.899 r_angle_refined_deg 1.103 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.604 r_dihedral_angle_3_deg 13.249 r_dihedral_angle_4_deg 9.353 r_dihedral_angle_1_deg 5.372 r_scangle_it 5.061 r_mcangle_it 4.11 r_scbond_it 3.43 r_mcbond_it 2.899 r_angle_refined_deg 1.103 r_nbtor_refined 0.298 r_symmetry_vdw_refined 0.216 r_nbd_refined 0.191 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.078 r_symmetry_hbond_refined 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6242 Nucleic Acid Atoms Solvent Atoms 410 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing