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Structure of a Streptococcus pneumoniae fucose binding module in complex with the blood group A-tetrasaccharide
Crystallization Crystal Properties Matthews coefficient Solvent content 1.75 29.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.649 α = 90 b = 60.372 β = 90 c = 99.087 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 94.9 0.07 9.6 3.7 23677 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 98.5 0.32 3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 51.3 22454 1217 94.7 0.174 0.171 0.1807 0.236 0.2386 RANDOM 25.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 -0.17 -0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7 r_scangle_it 4.216 r_scbond_it 2.643 r_angle_refined_deg 1.69 r_mcangle_it 1.667 r_angle_other_deg 1.026 r_mcbond_it 1.011 r_symmetry_vdw_other 0.299 r_nbd_other 0.256 r_symmetry_vdw_refined 0.225
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7 r_scangle_it 4.216 r_scbond_it 2.643 r_angle_refined_deg 1.69 r_mcangle_it 1.667 r_angle_other_deg 1.026 r_mcbond_it 1.011 r_symmetry_vdw_other 0.299 r_nbd_other 0.256 r_symmetry_vdw_refined 0.225 r_nbd_refined 0.19 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.179 r_chiral_restr 0.178 r_nbtor_other 0.089 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_gen_planes_other 0.009 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2193 Nucleic Acid Atoms Solvent Atoms 405 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement MOLREP phasing