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Structure of a bacterial O-glcnacase in complex with glcnacstatin
Crystallization Crystal Properties Matthews coefficient Solvent content 2.65 53.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.254 α = 90 b = 145.92 β = 90 c = 152.571 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 20 100 0.07 12.8 3.7 67921 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.26 20 66547 1372 99.6 0.18 0.179 0.1777 0.219 0.2167 RANDOM 44.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 1.36 -1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.825 r_dihedral_angle_4_deg 19.249 r_dihedral_angle_3_deg 16.456 r_dihedral_angle_1_deg 7.456 r_scangle_it 5.526 r_scbond_it 3.914 r_mcangle_it 2.183 r_mcbond_it 1.441 r_angle_refined_deg 1.401 r_symmetry_hbond_refined 0.369
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.825 r_dihedral_angle_4_deg 19.249 r_dihedral_angle_3_deg 16.456 r_dihedral_angle_1_deg 7.456 r_scangle_it 5.526 r_scbond_it 3.914 r_mcangle_it 2.183 r_mcbond_it 1.441 r_angle_refined_deg 1.401 r_symmetry_hbond_refined 0.369 r_nbtor_refined 0.302 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.191 r_xyhbond_nbd_refined 0.14 r_chiral_restr 0.1 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9257 Nucleic Acid Atoms Solvent Atoms 459 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement