☰ Navigation Tabs
Dengue virus 4 NS3 helicase in complex with ssRNA and ADP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JLU PDB ENTRY 2JLU
Crystallization Crystal Properties Matthews coefficient Solvent content 2.06 39.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.023 α = 90 b = 104.794 β = 115.91 c = 72.974 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 31.9 100 0.08 13.3 4.2 193997 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.3 100 0.58 2.3 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2JLU 2.2 20 43344 2304 100 0.19437 0.19202 0.1915 0.23841 0.2403 RANDOM 35.237
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.85 2.21 -1.57 1.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.497 r_dihedral_angle_3_deg 15.938 r_dihedral_angle_4_deg 15.53 r_dihedral_angle_1_deg 5.459 r_scangle_it 1.685 r_angle_refined_deg 1.237 r_scbond_it 1.037 r_mcangle_it 0.781 r_mcbond_it 0.444 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.497 r_dihedral_angle_3_deg 15.938 r_dihedral_angle_4_deg 15.53 r_dihedral_angle_1_deg 5.459 r_scangle_it 1.685 r_angle_refined_deg 1.237 r_scbond_it 1.037 r_mcangle_it 0.781 r_mcbond_it 0.444 r_nbtor_refined 0.297 r_symmetry_vdw_refined 0.205 r_nbd_refined 0.191 r_xyhbond_nbd_refined 0.147 r_symmetry_hbond_refined 0.096 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7211 Nucleic Acid Atoms 276 Solvent Atoms 357 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling