2JOT
Nuclear Magnetic Resonance Studies on Huwentoxin-XI from the Chinese Bird Spider Ornithoctonus huwena
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D DQF-COSY | 5 mM [U-100% 15N] Huwentoxin-xi, 50mM K2HPO4-KH2PO4 buffer (adjust pH value to 4.0 using H3PO4), small amount of azide for stabilization, sodium 2, 2-dimethyl-2- silapentane-5-sulfonate (DSS) | 95% H2O/5% D2O | 50 | 4.0 | ambient | 303 | |
2 | 2D 1H-1H NOESY | 5 mM [U-100% 15N] Huwentoxin-xi, 50mM K2HPO4-KH2PO4 buffer (adjust pH value to 4.0 using H3PO4), small amount of azide for stabilization, sodium 2, 2-dimethyl-2- silapentane-5-sulfonate (DSS) | 95% H2O/5% D2O | 50 | 4.0 | ambient | 303 | |
3 | 2D 1H-13C HSQC | 5 mM [U-100% 15N] Huwentoxin-xi, 50mM K2HPO4-KH2PO4 buffer (adjust pH value to 4.0 using H3PO4), small amount of azide for stabilization, sodium 2, 2-dimethyl-2- silapentane-5-sulfonate (DSS) | 95% H2O/5% D2O | 50 | 4.0 | ambient | 303 | |
4 | 2D 1H-15N HSQC | 5 mM [U-100% 15N] Huwentoxin-xi, 50mM K2HPO4-KH2PO4 buffer (adjust pH value to 4.0 using H3PO4), small amount of azide for stabilization, sodium 2, 2-dimethyl-2- silapentane-5-sulfonate (DSS) | 95% H2O/5% D2O | 50 | 4.0 | ambient | 303 | |
5 | 3D 1H-15N TOCSY | 5 mM [U-100% 15N] Huwentoxin-xi, 50mM K2HPO4-KH2PO4 buffer (adjust pH value to 4.0 using H3PO4), small amount of azide for stabilization, sodium 2, 2-dimethyl-2- silapentane-5-sulfonate (DSS) | 95% H2O/5% D2O | 50 | 4.0 | ambient | 303 | |
6 | 3D 1H-15N NOESY | 5 mM [U-100% 15N] Huwentoxin-xi, 50mM K2HPO4-KH2PO4 buffer (adjust pH value to 4.0 using H3PO4), small amount of azide for stabilization, sodium 2, 2-dimethyl-2- silapentane-5-sulfonate (DSS) | 95% H2O/5% D2O | 50 | 4.0 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 500 |
3 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, distance geometry | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
2 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |