2JQJ
NMR structure of yeast Dun1 FHA domain
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D TROSY-HNCACB | 0.4 mM [U-13C; U-15N; 60% 2H] protein, 150 mM NaCl, 2 mM DTT, 1 mM EDTA, 5 mM HEPES | 90% H2O/10% D2O | 150 mM NaCl | 7.5 | ambient | 293 | |
2 | 3D TROSY-CBCA(CO)NH | 0.4 mM [U-13C; U-15N; 60% 2H] protein, 150 mM NaCl, 2 mM DTT, 1 mM EDTA, 5 mM HEPES | 90% H2O/10% D2O | 150 mM NaCl | 7.5 | ambient | 293 | |
3 | 3D HNCA | 0.4 mM [U-13C; U-15N] protein, 150 mM NaCl, 1 mM EDTA, 5 mM HEPES, 2 mM DTT | 90% H2O/10% D2O | 150 mM NaCl | 7.5 | ambient | 293 | |
4 | 3D HN(CO)CA | 0.4 mM [U-13C; U-15N] protein, 150 mM NaCl, 1 mM EDTA, 5 mM HEPES, 2 mM DTT | 90% H2O/10% D2O | 150 mM NaCl | 7.5 | ambient | 293 | |
5 | 3D 1H-13C NOESY | 0.4 mM [U-13C; U-15N] protein, 150 mM NaCl, 1 mM EDTA, 2 mM DTT, 5 mM HEPES | 100% D2O | 150 mM NaCl | 7.5 | ambient | 293 | |
6 | 3D 1H-15N TOCSY | 0.4 mM [U-15N] protein, 150 mM NaCl, 2 mM DTT, 1 mM EDTA, 5 mM HEPES | 90% H2O/10% D2O | 150 mM NaCl | 7.5 | ambient | 293 | |
7 | 3D 1H-15N NOESY | 0.4 mM [U-15N] protein, 150 mM NaCl, 2 mM DTT, 1 mM EDTA, 5 mM HEPES | 90% H2O/10% D2O | 150 mM NaCl | 7.5 | ambient | 293 | |
8 | 3D HNHA | 0.4 mM [U-15N] protein, 150 mM NaCl, 2 mM DTT, 1 mM EDTA, 5 mM HEPES | 90% H2O/10% D2O | 150 mM NaCl | 7.5 | ambient | 293 | |
9 | 3D HNHB | 0.4 mM [U-15N] protein, 150 mM NaCl, 2 mM DTT, 1 mM EDTA, 5 mM HEPES | 90% H2O/10% D2O | 150 mM NaCl | 7.5 | ambient | 293 | |
10 | 3D HCCH-TOCSY | 0.4 mM [U-13C; U-15N] protein, 150 mM NaCl, 1 mM EDTA, 2 mM DTT, 5 mM HEPES | 100% D2O | 150 mM NaCl | 7.5 | ambient | 293 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 800 |
2 | Bruker | DMX | 600 |
3 | Bruker | AVANCE | 800 |
4 | Bruker | AVANCE | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | 1.1 | Brunger, A.T. et al. |
2 | processing | NMRPipe | Delaglio, F. et al. | |
3 | data analysis | NMRView | Johnson, B.A. et al. | |
4 | refinement | CNS | 1.1 | Brunger, A.T. et al. |