2JT5

solution structure of matrix metalloproteinase 3 (MMP-3) in the presence of n-hydroxy-2-[n-(2-hydroxyethyl)biphenyl-4-sulfonamide] hydroxamic acid (MLC88)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-98% 15N] protein90% H2O/10% D2O3008ambient298
23D 1H-15N NOESY1 mM [U-98% 15N] protein90% H2O/10% D2O3008ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE900
NMR Refinement
MethodDetailsSoftware
molecular dynamicsThe docked structure with Autodock was energy minimized with Xplor-NIH using the experimental dataX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number100
Conformers Submitted Total Number1
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
2refinementAutoDock3.0Morris, Goodsell, Huey, Lindstorm, Hart, Kurowski, Halliday, Belew, Olson
3data analysisSparkyGoddard