2K29
Structure of the DBD domain of E. coli antitoxin RelB
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5-1.0 mM [U-100% 13C; U-100% 15N] RelBN, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 1 uM sodium azide | 90% H2O/10% D2O | 0.12 | 7.0 | 1 atm | 303 | |
2 | 3D HNCACB | 0.5-1.0 mM [U-100% 13C; U-100% 15N] RelBN, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 1 uM sodium azide | 90% H2O/10% D2O | 0.12 | 7.0 | 1 atm | 303 | |
3 | 3D CBCA(CO)NH | 0.5-1.0 mM [U-100% 13C; U-100% 15N] RelBN, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 1 uM sodium azide | 90% H2O/10% D2O | 0.12 | 7.0 | 1 atm | 303 | |
4 | 3D C(CO)NH | 0.5-1.0 mM [U-100% 13C; U-100% 15N] RelBN, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 1 uM sodium azide | 90% H2O/10% D2O | 0.12 | 7.0 | 1 atm | 303 | |
5 | 3D H(CCO)NH | 0.5-1.0 mM [U-100% 13C; U-100% 15N] RelBN, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 1 uM sodium azide | 90% H2O/10% D2O | 0.12 | 7.0 | 1 atm | 303 | |
6 | 3D HNCO | 0.5-1.0 mM [U-100% 13C; U-100% 15N] RelBN, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 1 uM sodium azide | 90% H2O/10% D2O | 0.12 | 7.0 | 1 atm | 303 | |
7 | 2D 1H-13C HSQC | 0.5-1.0 mM [U-100% 13C; U-100% 15N] RelBN, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 1 uM sodium azide | 100% D2O | 0.12 | 7.0 | 1 atm | 303 | |
8 | 3D HCCH-TOCSY | 0.5-1.0 mM [U-100% 13C; U-100% 15N] RelBN, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 1 uM sodium azide | 100% D2O | 0.12 | 7.0 | 1 atm | 303 | |
9 | 3D 1H-15N NOESY | 0.5-1.0 mM [U-100% 13C; U-100% 15N] RelBN, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 1 uM sodium azide | 90% H2O/10% D2O | 0.12 | 7.0 | 1 atm | 303 | |
10 | 3D 1H-13C NOESY | 0.5-1.0 mM [U-100% 13C; U-100% 15N] RelBN, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 1 uM sodium azide | 90% H2O/10% D2O | 0.12 | 7.0 | 1 atm | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | The structure was determined using a combination of NOE and residual dipolar coupling data. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
2 | refinement | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
3 | collection | VNMR | 6.1C | Varian |
4 | chemical shift assignment | XEASY | Bartels et al. |