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Recognition dynamics up to microseconds revealed from RDC derived ubiquitin ensemble in solution
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.9 mM [U-100% 13C; U-100% 15N] ubiquitin, 50 mM sodium phosphate 90% H2O/10% D2O 50 6.5 ambient 308 2 2D 1H-15N HSQC 0.6 mM [U-100% 13C; U-100% 15N] ubiquitin, 50 mM sodium phosphate 90% H2O/10% D2O
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 700 3 Bruker DRX 800
NMR Refinement Method Details Software simulated annealing molecular dynamics simulated annealing ensemble refinement NMRDraw
NMR Ensemble Information Conformer Selection Criteria Conformers Calculated Total Number 1000 Conformers Submitted Total Number 116 Representative Model 1 (n/a)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 refinement GROMACS van Gunsteren and Berendsen 3 data analysis CONCOORD de Groot, van Aalten, Scheek, Amadei, Vriend and Berendsen