2K7K
Human Acylphosphatase (AcPh) common type
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.6 mM protein, 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 50 | 5.7 | ambient | 300 | |
2 | 2D 1H-13C HSQC | 0.6 mM protein, 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 50 | 5.7 | ambient | 300 | |
3 | 3D C(CO)NH | 0.6 mM protein, 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 50 | 5.7 | ambient | 300 | |
4 | 3D HNCO | 0.6 mM protein, 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 50 | 5.7 | ambient | 300 | |
5 | 3D HNCACB | 0.6 mM protein, 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 50 | 5.7 | ambient | 300 | |
6 | 3D HN(CO)CA | 0.6 mM protein, 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 50 | 5.7 | ambient | 300 | |
7 | 3D 1H-15N NOESY | 0.6 mM protein, 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 50 | 5.7 | ambient | 300 | |
8 | 3D 1H-13C NOESY | 0.6 mM protein, 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 50 | 5.7 | ambient | 300 | |
9 | 3D 1H-15N TOCSY | 0.6 mM protein, 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 50 | 5.7 | ambient | 300 | |
10 | 3D HCCH-TOCSY | 0.6 mM protein, 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 50 | 5.7 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing, torsion angle dynamics | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | all calculated structures submitted |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | geometry optimization | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | collection | TopSpin | 2.0 | Bruker Biospin |
5 | data analysis | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
6 | chemical shift assignment | Sparky | Goddard | |
7 | data analysis | Sparky | Goddard | |
8 | peak picking | Sparky | Goddard |