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Solution NMR structure of de novo designed rossmann 2x2 fold protein, Northeast Structural Genomics Consortium target OR16
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.859 mM [U-100% 13C; U-100% 15N] protein 93% H2O/7% D2O 200 6.5 ambient 298 2 2D 1H-13C HSQC 0.867 mM [U-10% 13C; U-100% 15N] protein 93% H2O/7% D2O 200 6.5 ambient 298 3 3D CBCA(CO)NH 0.859 mM [U-100% 13C; U-100% 15N] protein 93% H2O/7% D2O 200 6.5 ambient 298 4 3D HNCACB 0.859 mM [U-100% 13C; U-100% 15N] protein 93% H2O/7% D2O 200 6.5 ambient 298 5 3D H(CCO)NH 0.859 mM [U-100% 13C; U-100% 15N] protein 93% H2O/7% D2O 200 6.5 ambient 298 6 GFT (4,3)D HABCABcoNHN 0.859 mM [U-100% 13C; U-100% 15N] protein 93% H2O/7% D2O 200 6.5 ambient 298 7 SIMUTANEOUS 1H, 15N, 13C NOESY 0.859 mM [U-100% 13C; U-100% 15N] protein 93% H2O/7% D2O 200 6.5 ambient 298 8 3D CCHTOCSY 0.859 mM [U-100% 13C; U-100% 15N] protein 93% H2O/7% D2O 200 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Varian INOVA 600
NMR Refinement Method Details Software distance geometry, simulated annealing, molecular dynamics, torsion angle dynamics CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 geometry optimization CNS Brunger, Adams, Clore, Gros, Nilges and Read 4 refinement CYANA Guntert, Mumenthaler and Wuthrich 5 structure solution CYANA Guntert, Mumenthaler and Wuthrich 6 geometry optimization CYANA Guntert, Mumenthaler and Wuthrich 7 refinement AutoStructure Huang, Tejero, Powers and Montelione 8 data analysis AutoStructure Huang, Tejero, Powers and Montelione 9 geometry optimization AutoStructure Huang, Tejero, Powers and Montelione 10 chemical shift assignment XEASY Bartels et al. 11 data analysis XEASY Bartels et al. 12 peak picking XEASY Bartels et al. 13 collection TopSpin Bruker Biospin 14 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 15 collection VnmrJ Varian 16 chemical shift assignment AutoAssign Zimmerman, Moseley, Kulikowski and Montelione