2KU7
Solution structure of MLL1 PHD3-Cyp33 RRM chimeric protein
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS | 93% H2O/7% D2O | 50 | 7.0 | ambient | 298.2 | |
2 | 2D 1H-13C HSQC | 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS | 93% H2O/7% D2O | 50 | 7.0 | ambient | 298.2 | |
3 | 3D HNCACB | 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS | 93% H2O/7% D2O | 50 | 7.0 | ambient | 298.2 | |
4 | 3D CBCA(CO)NH | 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS | 93% H2O/7% D2O | 50 | 7.0 | ambient | 298.2 | |
5 | 3D HBHA(CO)NH | 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS | 93% H2O/7% D2O | 50 | 7.0 | ambient | 298.2 | |
6 | 3D HCCH-TOCSY | 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS | 93% H2O/7% D2O | 50 | 7.0 | ambient | 298.2 | |
7 | 3D 15N-edited 1H-1H NOESY | 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS | 93% H2O/7% D2O | 50 | 7.0 | ambient | 298.2 | |
8 | 3D 13C-edited 1H-1H NOESY | 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS | 93% H2O/7% D2O | 50 | 7.0 | ambient | 298.2 | |
9 | 3D HNCO | 0.3-0.5 mM [U-100% 13C; U-100% 15N] MLL PHD3-Cyp33 RRM, 20 mM sodium phosphate, 50 mM sodium chloride, 0.4 mM DSS | 93% H2O/7% D2O | 50 | 7.0 | ambient | 298.2 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, molecular dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, F. et al. | |
3 | data analysis | Sparky | Goddard, T. et al. | |
4 | peak picking | Sparky | Goddard, T. et al. | |
5 | structure solution | CYANA | Guntert, P. et al. | |
6 | structure solution | X-PLOR NIH | Schwieters, C. et al. | |
7 | refinement | X-PLOR NIH | Schwieters, C. et al. |