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Structure of the AML1-ETO Nervy Domain - PKA(RIIa) complex and its contribution to AML1-ETO activity
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) 95% H2O/5% D2O 0.0 4.0 ambient 303 2 3D CBCA(CO)NH 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) 95% H2O/5% D2O 0.0 4.0 ambient 303 3 3D HNCO 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) 95% H2O/5% D2O 0.0 4.0 ambient 303 4 3D HNCACB 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) 95% H2O/5% D2O 0.0 4.0 ambient 303 5 3D HCCH-TOCSY 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) 95% H2O/5% D2O 0.0 4.0 ambient 303 6 3D HNHA 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) 95% H2O/5% D2O 0.0 4.0 ambient 303 7 3D H(CCO)NH 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) 95% H2O/5% D2O 0.0 4.0 ambient 303 8 3D 1H-15N NOESY 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) 95% H2O/5% D2O 0.0 4.0 ambient 303 9 3D 1H-13C NOESY 2 mM [U-99% 13C; U-99% 15N] NHR3, 2 mM [U-99% 13C; U-99% 15N] PKA(RIIa) 95% H2O/5% D2O 0.0 4.0 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian AVANCE 600 2 Varian AVANCE 500
NMR Refinement Method Details Software simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 15 Representative Model 1 (lowest energy)
Additional NMR Experimental Information Details The structure was determined using a combination of NOE and residual dipolar coupling data.
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 chemical shift assignment Sparky Goddard 4 peak picking Sparky Goddard 5 structure solution TALOS Cornilescu, Delaglio and Bax 6 refinement CNS Brunger, A. et al. 7 data analysis Procheck Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Tho