2L55
Solution structure of the C-terminal domain of SilB from Cupriavidus metallidurans
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
3 | 3D HNCO | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
4 | 3D HNCACB | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
5 | 3D HN(CO)CA | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
6 | 3D HN(COCA)CB | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
7 | 3D-intraHNCA | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
8 | 3D-intraHN(CA)CB | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
9 | 2D 1H-15N HADAMAC | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
10 | 3D C(CO)NH | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
11 | 3D 1H-15N NOESY | 1 mM [U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
12 | 3D 1H-13C NOESY | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
13 | 2D 1H-1H NOESY | 1 mM [U-100% 15N] protein, 50 mM MES | 100% D2O | 50 | 6.0 | ambient | 298 | |
14 | T1 relaxation | 1 mM [U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
15 | T1rho relaxation | 1 mM [U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
16 | T2 relaxation | 1 mM [U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 | |
17 | Heteronuclear NOE | 1 mM [U-100% 15N] protein, 50 mM MES | 90% H2O/10% D2O | 50 | 6.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | VNMRS | 800 |
2 | Varian | VNMRS | 600 |
3 | Varian | VNMRS | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, simulated annealing, molecular dynamics | CYANA (UNIO08), CNS, CNS, water refinement | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 1000 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | collection | VnmrJ | Varian | |
3 | data analysis | NMRView | Johnson, One Moon Scientific | |
4 | chemical shift assignment | BATCH | Lescop, Brutscher | |
5 | peak picking | UNIO08 | Torsten Herrmann | |
6 | chemical shift assignment | UNIO08 | Torsten Herrmann | |
7 | structure solution | UNIO08 | Torsten Herrmann | |
8 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
9 | data analysis | curvefit | AG Palmer | |
10 | determination of dihedral angles | TALOS | Cornilescu, Delaglio and Bax | |
11 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |