2L7C
Biophysical studies of lipid interacting regions of DGD2 in Arabidopsis thaliana
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 0.5 mM atDGD2_S227_245, 50 mM [U-2H] DPC, 10 % [U-2H] D2O, 50 mM sodium phosphate | 90% H2O/10% D2O | 50 | 5.7 | ambient | 298 | |
2 | 2D 1H-1H NOESY | 0.5 mM atDGD2_S227_245, 50 mM [U-2H] DPC, 10 % [U-2H] D2O, 50 mM sodium phosphate | 90% H2O/10% D2O | 50 | 5.7 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 23 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | chemical shift assignment | Sparky | Goddard | |
3 | data analysis | Sparky | Goddard | |
4 | peak picking | Sparky | Goddard | |
5 | collection | TopSpin | Bruker Biospin | |
6 | processing | TopSpin | Bruker Biospin | |
7 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |