2LBC
solution structure of tandem UBA of USP13
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20 mM sodium phosphate-1, 50 mM sodium chloride-2, 1 mM [U-100% 15N] entity-3 | 90% H2O/10% D2O | 6.5 | 1 atm | 298 | ||
2 | 3D CBCA(CO)NH | 20 mM sodium phosphate-4, 50 mM sodium chloride-5, 1 mM [U-100% 13C; U-100% 15N] entity-6 | 90% H2O/10% D2O | 6.5 | 1 atm | 298 | ||
3 | 3D HNCACB | 20 mM sodium phosphate-4, 50 mM sodium chloride-5, 1 mM [U-100% 13C; U-100% 15N] entity-6 | 90% H2O/10% D2O | 6.5 | 1 atm | 298 | ||
4 | 3D C(CO)NH | 20 mM sodium phosphate-4, 50 mM sodium chloride-5, 1 mM [U-100% 13C; U-100% 15N] entity-6 | 90% H2O/10% D2O | 6.5 | 1 atm | 298 | ||
5 | 3D HNHA | 20 mM sodium phosphate-1, 50 mM sodium chloride-2, 1 mM [U-100% 15N] entity-3 | 90% H2O/10% D2O | 6.5 | 1 atm | 298 | ||
6 | 3D HCCH-TOCSY | 20 mM sodium phosphate-4, 50 mM sodium chloride-5, 1 mM [U-100% 13C; U-100% 15N] entity-6 | 90% H2O/10% D2O | 6.5 | 1 atm | 298 | ||
7 | 3D 1H-15N NOESY | 20 mM sodium phosphate-1, 50 mM sodium chloride-2, 1 mM [U-100% 15N] entity-3 | 90% H2O/10% D2O | 6.5 | 1 atm | 298 | ||
8 | 3D 1H-13C NOESY | 20 mM sodium phosphate-4, 50 mM sodium chloride-5, 1 mM [U-100% 13C; U-100% 15N] entity-6 | 90% H2O/10% D2O | 6.5 | 1 atm | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | ARIA2.0 |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA2.0 | Linge, O'Donoghue and Nilges | |
2 | refinement | ARIA2.0 | Linge, O'Donoghue and Nilges | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | peak picking | Sparky | Goddard | |
5 | chemical shift assignment | Sparky | Goddard | |
6 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
7 | data analysis | ProcheckNMR | Laskowski and MacArthur |