2LSN
Solution structure of PFV RNase H domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-13C; U-15N] PFV RNase H, 90 % H2O, 10 % D2O | 90% H2O/10% D2O | 7.0 | 1 atm | 298 | ||
2 | 2D 1H-13C HSQC | 1 mM [U-13C; U-15N] PFV RNase H, 90 % H2O, 10 % D2O | 90% H2O/10% D2O | 7.0 | 1 atm | 298 | ||
3 | 3D HNCO | 1 mM [U-13C; U-15N] PFV RNase H, 90 % H2O, 10 % D2O | 90% H2O/10% D2O | 7.0 | 1 atm | 298 | ||
4 | 3D HNCA | 1 mM [U-13C; U-15N] PFV RNase H, 90 % H2O, 10 % D2O | 90% H2O/10% D2O | 7.0 | 1 atm | 298 | ||
5 | 3D HNCACB | 1 mM [U-13C; U-15N] PFV RNase H, 90 % H2O, 10 % D2O | 90% H2O/10% D2O | 7.0 | 1 atm | 298 | ||
6 | 3D CBCA(CO)NH | 1 mM [U-13C; U-15N] PFV RNase H, 90 % H2O, 10 % D2O | 90% H2O/10% D2O | 7.0 | 1 atm | 298 | ||
7 | 3D C(CO)NH | 1 mM [U-13C; U-15N] PFV RNase H, 90 % H2O, 10 % D2O | 90% H2O/10% D2O | 7.0 | 1 atm | 298 | ||
8 | 3D HBHA(CO)NH | 1 mM [U-13C; U-15N] PFV RNase H, 90 % H2O, 10 % D2O | 90% H2O/10% D2O | 7.0 | 1 atm | 298 | ||
9 | 3D HCCH-TOCSY | 1 mM [U-13C; U-15N] PFV RNase H, 90 % H2O, 10 % D2O | 90% H2O/10% D2O | 7.0 | 1 atm | 298 | ||
10 | 3D 1H-15N NOESY | 1 mM [U-13C; U-15N] PFV RNase H, 90 % H2O, 10 % D2O | 90% H2O/10% D2O | 7.0 | 1 atm | 298 | ||
11 | 3D 1H-13C NOESY aliphatic | 1 mM [U-13C; U-15N] PFV RNase H, 90 % H2O, 10 % D2O | 90% H2O/10% D2O | 7.0 | 1 atm | 298 | ||
12 | 3D 1H-13C NOESY aromatic | 1 mM [U-13C; U-15N] PFV RNase H, 90 % H2O, 10 % D2O | 90% H2O/10% D2O | 7.0 | 1 atm | 298 | ||
13 | 3D 13C-13C-1H NOESY aliphatic | 1 mM [U-13C; U-15N] PFV RNase H, 90 % H2O, 10 % D2O | 90% H2O/10% D2O | 7.0 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 120 |
Conformers Submitted Total Number | 19 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | Bruker Biospin | |
2 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
3 | structure solution | XPLOR-NIH | Schwieters, Kuszewski, Tjandra and Clore | |
4 | refinement | XPLOR-NIH | Schwieters, Kuszewski, Tjandra and Clore |