2LVX
MRH domain of the Glucosidase II beta subunit from S. pombe
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 10 mM [U-100% 2H] imidazole, 150 mM sodium chloride, 95 % H2O, 5 % [U-99% 2H] D2O | 95% H2O/5% D2O | 150 | 7.1 | AMBIENT | 298 | |
2 | 3D_13C-separated_NOESY | 10 mM [U-100% 2H] imidazole, 150 mM sodium chloride, 95 % H2O, 5 % [U-99% 2H] D2O | 95% H2O/5% D2O | 150 | 7.1 | AMBIENT | 298 | |
3 | 3D_13C-separated_NOESY (AROMATIC) | 10 mM [U-100% 2H] imidazole, 150 mM sodium chloride, 95 % H2O, 5 % [U-99% 2H] D2O | 95% H2O/5% D2O | 150 | 7.1 | AMBIENT | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENT. | STRUCTURES ARE BASED ON A TOTAL OF 1800 NOE CONSTRAINTS (338 INTRA, 465 SEQUENTIAL, 260 MEDIUM, AND 730 LONG RANGE) AND 130 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. | Xplor-NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Xplor-NIH | 2.9.3 | SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. |
2 | collection | TopSpin | 2.1 | Bruker |
3 | processing | NMRPipe | 2009 | Delagio,F. et al. |
4 | data analysis | XEASY | 1.3 | Eccles, C., Guntert, P., Billeter, M., Wuthrich, K. |
5 | data analysis | GARANT | 2.1 | C. Bartels |
6 | structural calculation | CYANA | 2.1 | Guntert, P. |
7 | refinement | CYANA | 2.1 | Guntert, P. |