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NMR Structure of Mdm2 (6-125) with Pip-1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCA 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT 90% H2O/10% D2O 50 7.0 ambient 288.15 2 3D HNCACB 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT 90% H2O/10% D2O 50 7.0 ambient 288.15 3 3D CBCA(CO)NH 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT 90% H2O/10% D2O 50 7.0 ambient 288.15 4 3D HNCO 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT 90% H2O/10% D2O 50 7.0 ambient 288.15 5 3D HN(CO)CA 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT 90% H2O/10% D2O 50 7.0 ambient 288.15 6 3D HCCH-TOCSY 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT 90% H2O/10% D2O 50 7.0 ambient 288.15 7 3D 1H-15N NOESY 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT 90% H2O/10% D2O 50 7.0 ambient 288.15 8 3D 1H-13C NOESY 500 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM [U-100% 2H] DTT 90% H2O/10% D2O 50 7.0 ambient 288.15
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 500
NMR Refinement Method Details Software torsion angle dynamics, DGSA-distance geometry simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 10 Conformers Submitted Total Number 5 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CYANA Guntert, Mumenthaler and Wuthrich 2 structure solution CYANA Guntert, Mumenthaler and Wuthrich 3 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 4 structure solution Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman