2MNY
NMR Structure of KDM5B PHD1 finger
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.8 mM [U-13C; U-15N] PHD1 finger of KDM5B-1, 90% H2O, 10% D2O | 90% H2O/10% D2O | 100 | 7.2 | 1 atm | 293 | |
2 | 3D CBCA(CO)NH | 0.8 mM [U-13C; U-15N] PHD1 finger of KDM5B-1, 90% H2O, 10% D2O | 90% H2O/10% D2O | 100 | 7.2 | 1 atm | 293 | |
3 | 2D 1H-15N HSQC | 0.8 mM [U-13C; U-15N] PHD1 finger of KDM5B-1, 90% H2O, 10% D2O | 90% H2O/10% D2O | 100 | 7.2 | 1 atm | 293 | |
4 | 3D HNCO | 0.8 mM [U-13C; U-15N] PHD1 finger of KDM5B-1, 90% H2O, 10% D2O | 90% H2O/10% D2O | 100 | 7.2 | 1 atm | 293 | |
5 | 3D 1H-15N TOCSY | 0.8 mM [U-13C; U-15N] PHD1 finger of KDM5B-1, 90% H2O, 10% D2O | 90% H2O/10% D2O | 100 | 7.2 | 1 atm | 293 | |
6 | 3D HNCA | 0.8 mM [U-13C; U-15N] PHD1 finger of KDM5B-1, 90% H2O, 10% D2O | 90% H2O/10% D2O | 100 | 7.2 | 1 atm | 293 | |
7 | 3D HNCACB | 0.8 mM [U-13C; U-15N] PHD1 finger of KDM5B-1, 90% H2O, 10% D2O | 90% H2O/10% D2O | 100 | 7.2 | 1 atm | 293 | |
8 | 3D 1H-13C NOESY aliphatic | 0.8 mM [U-13C; U-15N] PHD1 finger of KDM5B-2 | 100% D2O | 100 | 7.2 | 1 atm | 293 | |
9 | 3D 1H-13C NOESY aromatic | 0.8 mM [U-13C; U-15N] PHD1 finger of KDM5B-2 | 100% D2O | 100 | 7.2 | 1 atm | 293 | |
10 | 3D HCCH-TOCSY | 0.8 mM [U-13C; U-15N] PHD1 finger of KDM5B-2 | 100% D2O | 100 | 7.2 | 1 atm | 293 | |
11 | 2D 1H-13C HSQC aromatic | 0.8 mM [U-13C; U-15N] PHD1 finger of KDM5B-2 | 100% D2O | 100 | 7.2 | 1 atm | 293 | |
12 | 2D 1H-13C HSQC aliphatic | 0.8 mM [U-13C; U-15N] PHD1 finger of KDM5B-2 | 100% D2O | 100 | 7.2 | 1 atm | 293 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Agilent | DD2 | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger A. T. et.al. |