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Structural insights of TM domain of LAMP-2A in DPC micelles
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.6 mM [U-99% 15N] TM domain of LAMP2A 90% H2O/10% D2O 25 6.3 ambient 310 2 3D HNCO 0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A 90% H2O/10% D2O 25 6.3 ambient 310 3 3D HNCA 0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A 90% H2O/10% D2O 25 6.3 ambient 310 4 3D HN(CO)CA 0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A 90% H2O/10% D2O 25 6.3 ambient 310 5 3D CBCA(CO)NH 0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A 90% H2O/10% D2O 25 6.3 ambient 310 6 3D HNCACB 0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A 90% H2O/10% D2O 25 6.3 ambient 310 7 3D 1H-15N NOESY 0.6 mM [U-99% 15N] TM domain of LAMP2A 90% H2O/10% D2O 25 6.3 ambient 310 8 4D HCCH NOESY 0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A 100% D2O 25 6.3 ambient 310 9 3D 13C Filter NOESY 0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A 100% D2O 25 6.3 ambient 310
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800 3 Bruker AVANCE 900
NMR Refinement Method Details Software simulated annealing, torsion angle dynamics TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis PIPP Garrett 4 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 5 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore