2MZ0
Solution NMR Structure of PDFL2.1 from Arabidopsis thaliana
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide | 95% H2O/5% D2O | 0.16 | 6.5 | ambient | 298 | |
2 | 3D HNCACB | 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide | 95% H2O/5% D2O | 0.16 | 6.5 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide | 95% H2O/5% D2O | 0.16 | 6.5 | ambient | 298 | |
4 | 3D HNCO | 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide | 95% H2O/5% D2O | 0.16 | 6.5 | ambient | 298 | |
5 | 3D HCCH-TOCSY | 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide | 95% H2O/5% D2O | 0.16 | 6.5 | ambient | 298 | |
6 | 3D H(CCO)NH | 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide | 95% H2O/5% D2O | 0.16 | 6.5 | ambient | 298 | |
7 | 3D C(CO)NH | 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide | 95% H2O/5% D2O | 0.16 | 6.5 | ambient | 298 | |
8 | 3D 1H-15N NOESY | 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide | 95% H2O/5% D2O | 0.16 | 6.5 | ambient | 298 | |
9 | 3D 1H-13C NOESY | 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide | 95% H2O/5% D2O | 0.16 | 6.5 | ambient | 298 | |
10 | 3D HNHA | 1 mM [U-13C; U-15N] protein, 0.04 mM potassium chloride, 0.02 mM potassium phosphate, 1 mM sodium azide | 95% H2O/5% D2O | 0.16 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 850 |
2 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR NIH | 2.37 | Schwieters, C. et al. |
2 | processing | NMRPipe | 7.5 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
3 | peak picking | Sparky | 3.113 | Goddard |
4 | chemical shift assignment | Sparky | 3.113 | Goddard |
5 | geometry optimization | TALOS | 3.80F1 | Cornilescu, Delaglio and Bax |
6 | collection | TopSpin | 3.1 | Bruker Biospin |
7 | refinement | X-PLOR NIH | 2.37 | Schwieters, C. et al. |