2N5G
NMR structure of KorA, a plasmid-encoded, global transcription regulator KorA
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | HNCA | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
2 | HN(CO)CA | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
3 | HNCO | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
4 | HN(CA)CO | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
5 | CBCA(CO)NH | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
6 | HNCACB | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
7 | HB(CB)HA(CA)CONH | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
8 | HB(CB)HA(CA)NH | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
9 | HC(C)H-TOCSY | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
10 | TOCSY-15N HSQC | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
11 | (H)CC(CO)NH-TOCSY | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
12 | H(CC)(CO)NH-TOCSY | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
13 | 2D 1H-1H TOCSY | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
14 | (HB) CB (CG CD) HD | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 | |||
15 | (HB) CB (CG CD CE) HE | 1 mM [U-13C; U-15N] KorA, 25 mM Phosphate Buffer, 0.1 mM EDTA | 95% H2O/5% D2O | 6.2 | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Varian | UNITYPLUS | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | CCPN |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (n/a) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | CCPN | 1.0.8 | CCPN |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | structure solution | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | processing | NMRPipe | Linge, O'Donoghue and Nilges | |
5 | structure solution | NMRPipe | Linge, O'Donoghue and Nilges | |
6 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
7 | structure solution | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
8 | processing | NMRPipe | Linge, O'Donoghue and Nilges | |
9 | structure solution | NMRPipe | Linge, O'Donoghue and Nilges | |
10 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
11 | refinement | ARIA | Linge, O'Donoghue and Nilges |