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Soluble domain of Rieske Iron Sulfur protein.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2NUK pdb entry 2NUK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 276 1.5 M ammonium sulfate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 276K
Crystal Properties Matthews coefficient Solvent content 2.2 44.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.935 α = 90 b = 69.935 β = 90 c = 54.582 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 18 100 0.058 29 5.8 29270 29270 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.4 55.8 0.235 3.8 4.5 1634
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2NUK 1.35 18 27466 1467 100 0.1429 0.14206 0.15929 0.1808 RANDOM 21.059
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.54 0.54 -1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.441 r_dihedral_angle_4_deg 12.717 r_dihedral_angle_3_deg 9.309 r_dihedral_angle_1_deg 6.042 r_scangle_it 3.047 r_scbond_it 2.132 r_mcangle_it 1.516 r_angle_refined_deg 1.388 r_mcbond_it 0.979 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.441 r_dihedral_angle_4_deg 12.717 r_dihedral_angle_3_deg 9.309 r_dihedral_angle_1_deg 6.042 r_scangle_it 3.047 r_scbond_it 2.132 r_mcangle_it 1.516 r_angle_refined_deg 1.388 r_mcbond_it 0.979 r_nbtor_refined 0.315 r_nbd_refined 0.192 r_symmetry_vdw_refined 0.183 r_xyhbond_nbd_refined 0.098 r_chiral_restr 0.078 r_symmetry_hbond_refined 0.077 r_bond_refined_d 0.007 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1061 Nucleic Acid Atoms Solvent Atoms 149 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing