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Crystal structure of human hydroxyacid oxidase 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GOX PDB ENTRIES 1GOX, 1LTD, 1TB3 experimental model PDB 1LTD PDB ENTRIES 1GOX, 1LTD, 1TB3 experimental model PDB 1TB3 PDB ENTRIES 1GOX, 1LTD, 1TB3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 293 0.1M MMT, 30.0% PEG 1K, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.17 43.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.294 α = 90 b = 97.294 β = 90 c = 79.87 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 26.06 99.8 0.092 3.7 81283
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.42 100 0.439 3.6
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRIES 1GOX, 1LTD, 1TB3 1.35 26.06 77224 77224 4059 0.126 0.126 0.126 0.13 0.155 0.1494
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 2568 2760.5
RMS Deviations Key Refinement Restraint Deviation s_from_restr_planes 0.381 s_non_zero_chiral_vol 0.062 s_zero_chiral_vol 0.058 s_angle_d 0.033 s_bond_d 0.032 s_anti_bump_dis_restr 0.028 s_similar_dist s_rigid_bond_adp_cmpnt s_similar_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2569 Nucleic Acid Atoms Solvent Atoms 156 Heterogen Atoms 36
Software Software Software Name Purpose MAR345 data collection PHASER phasing SHELXL-97 refinement MOSFLM data reduction CCP4 data scaling