☰ Navigation Tabs
Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-BR Complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2H6V pdb entry 2H6V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 14% (W/V) PEG 3350, 100 MM NH4 ACETATE, 0.2 M NH4Br, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 100K
Crystal Properties Matthews coefficient Solvent content 2.03 39.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.144 α = 90 b = 62.852 β = 90 c = 69.172 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 28.684 97.7 0.098 0.098 6.9 5.2 20873 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 95.2 0.377 0.377 2 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2H6V 1.8 15.15 19578 1062 97.03 0.17909 0.17753 0.1893 0.20835 0.2204 RANDOM 14.178
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.75 0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.591 r_dihedral_angle_4_deg 18.815 r_dihedral_angle_3_deg 14.557 r_dihedral_angle_1_deg 7.809 r_scangle_it 2.824 r_scbond_it 2.08 r_angle_refined_deg 1.523 r_angle_other_deg 1.281 r_mcangle_it 1.181 r_mcbond_it 1.067
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.591 r_dihedral_angle_4_deg 18.815 r_dihedral_angle_3_deg 14.557 r_dihedral_angle_1_deg 7.809 r_scangle_it 2.824 r_scbond_it 2.08 r_angle_refined_deg 1.523 r_angle_other_deg 1.281 r_mcangle_it 1.181 r_mcbond_it 1.067 r_symmetry_vdw_refined 0.391 r_symmetry_vdw_other 0.362 r_xyhbond_nbd_refined 0.293 r_nbd_refined 0.262 r_nbd_other 0.2 r_nbtor_refined 0.175 r_mcbond_other 0.171 r_symmetry_hbond_refined 0.155 r_chiral_restr 0.086 r_nbtor_other 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1885 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 4
Software Software Software Name Purpose MOLREP phasing REFMAC refinement MOSFLM data reduction CCP4 data scaling